Protein ZmWHIRLY1
ZmWHIRLY1 is a protein in the WHIRLY family.
Information
TF Name: ZmWHIRLY1
Species: Maize
TF Family: WHIRLY
Gene Name(Synonym): WHY1
Uniprot ID: A0A1D6PDQ1
Subgenome: 2

Protein ZmWHIRLY1

ZmWHIRLY1 is a protein in the WHIRLY family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
PF08536
Zm00001eb270470_T002
Zm00001eb270470_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d036148DAPseq no logo sequence fimo position
Zm00001d036148DAPseq no logo sequence fimo position
Zm00001d036148ChIPseq no logo sequence fimo position
Zm00001d036148PChIPseq no logo sequence fimo position

Interactions where ZmWHIRLY1 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmWHIRLY1 is the target  
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There are 107 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb270470_T002 from maize genome v5

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWST
FVSSIKPEESRPYSRPQSTSEYEWRR

MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWST
FVSSIKPEESRPYSRPQSTSEYEWRR

MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWST
FVSSIKPEESRPYSRPQSTSEYEWRR

MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWST
FVSSIKPEESRPYSRPQSTSEYEWRR

MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWST
FVSSIKPEESRPYSRPQSTSEYEWRR

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF08536
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Nucleotide Sequence
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CGACAACAAACAACAGAGCAGGACA...

GRMZM2G155662_T01 from maize genome v3


Related TFome: pUT3235

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWST
FVSSIKPEESRPYSRPQSTSEYEWRR

Nucleotide Sequence
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CGACAACAAACAACAGAGCAGGACA...

GRMZM2G155662_T02 from maize genome v3

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLKSAYQR

Nucleotide Sequence
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AGCCGCCTGTCTCCTCCTCGTTCTC...

GRMZM2G155662_T03 from maize genome v3

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRRLI

Nucleotide Sequence
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AGCCGCCTGTCTCCTCCTCGTTCTC...

GRMZM2G155662_T04 from maize genome v3

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVCFFIPNAPI

Nucleotide Sequence
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GTCTGAGCCGCCTGTCTCCTCCTCG...

Zm00001d036148_T001 from maize genome v4

Amino Acid Sequence
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MNFFDVIQCYAMQVFSLSVWEIGTLLTLGPTDSCEFFHDPFKGRSLGTVHQENIYHIISSFDINSEEGKVRKVLKIEPTP
DGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWSTFVSSIKPEESRPYSRPQSTSEYEWRR

Nucleotide Sequence
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ATGAACTTTTTTGATGTAATTCAAT...

Zm00001d036148_T002 from maize genome v4

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVCFFIPNAPI

Nucleotide Sequence
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CGCCCACCCGTCTGACTGTCTGAGC...

Zm00001d036148_T003 from maize genome v4

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSLGTVHQENIYHIISSFDINSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGE
FAVIVSTFNYIIPHLMGWSTFVSSIKPEESRPYSRPQSTSEYEWRR

Nucleotide Sequence
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CGCCCACCCGTCTGACTGTCTGAGC...

Zm00001d036148_T004 from maize genome v4

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLSVQNRLINVDESIYIPITKGEFAVIVSTFNYIIPHLMGWST
FVSSIKPEESRPYSRPQSTSEYEWRR

Nucleotide Sequence
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GAGCCGCCTGTCTCCTCCTCGTTCT...

Zm00001d036148_T005 from maize genome v4

Amino Acid Sequence
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MGWSTFVSSIKPEESRPYSRPQSTSEYEWRR

Nucleotide Sequence
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AGCGAAGAAGGTAAAGTGCGTAAGG...

Zm00001d036148_T006 from maize genome v4

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRRLVSFNVPDYLSSSESPPCCLVLRFPEKMLQMQIIMLCILLFS

Nucleotide Sequence
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GCCTGTCTCCTCCTCGTTCTCTCAG...

Zm00001eb270470_T001 from maize genome v5

Amino Acid Sequence
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MPPPAPLFLSLASTPPPALMPVHHPRAPQSLTLVPPVASSRKAAAVPACPVASPRHSDYFDPRAPPPPRGDGGYGRPPNG
AQDGRVFTSYSIYKGKAALSFDPRPPLFVPLDSGAYKVAKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEIGTLLTLGP
TDSCEFFHDPFKGRSEEGKVRKVLKIEPTPDGNGRFFNLKSAYQR

Nucleotide Sequence
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CGACAACAAACAACAGAGCAGGACA...


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